Lessons from 5 Years of Routine Whole-Genome Sequencing for Epidemiologic Surveillance of Shiga Toxin-Producing Escherichia coli, France, 2018-2022

Publié le 7 mai 2025
Mis à jour le 14 octobre 2025

Whole-genome sequencing (WGS) is routine for surveillance of Shiga toxin-producing Escherichia coli human isolates in France. Protocols use EnteroBase hierarchical clustering at

Auteur : Jones Gabrielle, Nodari Carolina Silva, Fabre Laëtitia, de Valk Henriette, Noel Harold, Cointe Aurélie, Bonacorsi Stéphane, Weill François-Xavier, Le Strat Yann
Emerging infectious diseases, 2025, vol. 31, n°. 13, p. 117-128